About InteR3M
InteR3M collects information on RRMs from the following resources
| # | Source | Information |
|---|---|---|
| 1 | Pfam | RRM families and domains |
| 2 | UniProtKB | Protein Information |
| 3 | PDB | 3D structures |
| 4 | Literature | RRM-ligand binding experiments |
InteR3M is freely available under the Creative Commons Attribution (CC BY 4.0
) licence.
Release notes can be found here .
InteR3M database is developed at the CAPSID team, within the RNAct project. This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 813239.
Relational Model of InteR3M Database
InteR3M Statistics
The InteR3M (Interactions of RNA and RNA Recognition Motif) database contains a total of 400,892 RRM domain instances from 256,266 unique proteins and from 19 different Pfam families. It also contains 550 structures of RNA-RRM complexes from the PDB, and 457,933 amino-acid - nucleotide contacts extracted from those structures, out of which 1,926 are stacking interactions. InteR3M also covers 398 non-structural experiments (RRM-RNA binding assays) retrieved from the literature.
Contact Us
For the bug report and questions/suggestions/criticism contact: inter3mdb@inria.fr.