Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAF | B | 231 | ASP | OD2 | 4.75 Å | van-der-waals | E | 6 | U | C2 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CB | 4.81 Å | van-der-waals | E | 6 | U | C2 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CA | 3.71 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | C | 4.48 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | C | 3.96 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CB | 3.29 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | CG | 3.79 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | CA | 4.86 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD2 | 3.7 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CB | 3.82 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CA | 4.32 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | CB | 4.92 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | C | 4.9 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | CG | 4.22 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | N | 3.16 Å | hbond | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | C | 3.55 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | 3.49 Å | stack | E | 5 | BRU | 3VAFE00 | Lig54 | ||
P26368_linker1 | 3VAF | B | 231 | ASP | CB | 4.01 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CG | 4.7 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | N | 3.09 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | N | 4.94 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD2 | 4.81 Å | van-der-waals | E | 6 | U | C6 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD2 | 2.65 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | N | 4.01 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD2 | 3.12 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | N | 4.65 Å | van-der-waals | E | 6 | U | C5 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CB | 3.73 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CA | 4.6 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | CB | 4.11 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 230 | HIS | CA | 3.84 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | CG | 4.73 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | CB | 4.96 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 229 | PRO | O | 4.38 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | N | 4.37 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | CG | 3.04 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD1 | 3.34 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD1 | 4.07 Å | van-der-waals | E | 6 | U | N3 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD2 | 3.86 Å | van-der-waals | E | 6 | U | C5 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | OD1 | 4.01 Å | van-der-waals | E | 6 | U | C4 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | CG | 4.79 Å | van-der-waals | E | 6 | U | C5 | 3VAFE00 | Lig54 |
P26368_linker1 | 3VAF | B | 231 | ASP | CA | 4.11 Å | van-der-waals | E | 6 | U | O4 | 3VAFE00 | Lig54 |