Toggle column: Linker Name PDB ID Linker Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Chain Nucleotide Position Nucleotide Nucleotide Atom Ligand Structurename Ligand ID
Linker Name PDB ID Linker Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Chain Nucleotide Position Nucleotide Nucleotide Atom Ligand Structurename Ligand ID
P26368_linker1 3VAG A 228 ARG C 4.87 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 3.61 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA A 4.59 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 4.44 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.41 Å van-der-waals P 5 U C6 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA B 4.53 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP N 2.96 Å hbond P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 4.46 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 3.84 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG C 4.86 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG C 4.63 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 3.83 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD1 4.47 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CG 4.75 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 4.27 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 3.98 Å van-der-waals P 5 U C1' 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 4.78 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CD 4.47 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 3.77 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 4.49 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD1 4.88 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG A 4.91 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.78 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO C 4.32 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 3.67 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 3.38 Å van-der-waals P 5 U C2' 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 3.76 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 3.66 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD1 3.68 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 4.05 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.86 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 3.94 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CA 4.93 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 3.95 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CB 4.97 Å van-der-waals P 6 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 3.91 Å van-der-waals P 5 U C6 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CA 4.5 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP 3.84 Å stack P 6 U 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS C B 3.91 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA A 3.88 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CA 3.31 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA B 3.99 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CG 4.88 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 4.56 Å van-der-waals P 5 U C6 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG O 3.91 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.74 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CB 4.11 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CB 3.49 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 3.87 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 232 TYR N 4.93 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 3.65 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CA 3.73 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 4.81 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CG 4.87 Å van-der-waals P 6 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO N 4.66 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO O 4.8 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 4.33 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.64 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 4.74 Å van-der-waals P 5 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 4.35 Å van-der-waals P 5 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 4.85 Å van-der-waals P 5 U C2' 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG C 4.92 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO N 4.38 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.93 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 4.57 Å van-der-waals P 5 U C6 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.86 Å van-der-waals P 5 U C2' 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 4.06 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CB 3.95 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP N 4.93 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 4.38 Å van-der-waals P 5 U C2' 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS C A 3.88 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 3.97 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 3.35 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 3.65 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 4.82 Å van-der-waals P 5 U C3' 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CB 4.93 Å van-der-waals P 6 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CB 4.55 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CA 4.02 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 4.42 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA A 4.73 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 4.8 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 3.79 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CB 4.17 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CB 4.37 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 3.88 Å van-der-waals P 5 U C6 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA B 4.85 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD2 3.89 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO C 3.61 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO C 4.59 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 4.68 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 4.15 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO C 4.26 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG C 4.23 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.71 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG O 4.06 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS C A 4.97 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CG 4.8 Å van-der-waals P 6 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA A 4.02 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.48 Å van-der-waals P 5 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 4.48 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 4.12 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD2 4.42 Å van-der-waals P 6 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CA 4.62 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD2 3.41 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 3.88 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA A 4.46 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 4.95 Å van-der-waals P 5 U C2' 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 4.11 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 3.01 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG O 3.69 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO C 3.81 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.13 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG O 4.02 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB A 4.72 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.38 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 4.27 Å van-der-waals P 5 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO O 4.6 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 4.8 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 2.98 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.94 Å van-der-waals P 5 U N1 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CB 3.33 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CA 4.82 Å van-der-waals P 6 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CG 3.22 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 4.2 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CA 4.15 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 4.4 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO N 4.99 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 4.34 Å van-der-waals P 5 U C1' 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS ND1B 3.98 Å van-der-waals P 5 U C2 3VAGP00 Lig113
P26368_linker1 3VAG A 228 ARG O 3.18 Å hbond P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP OD2 4.57 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CG B 4.66 Å van-der-waals P 5 U C1' 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CB 3.93 Å van-der-waals P 6 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP N 4.14 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP CG 4.03 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N A 3.33 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS NE2B 3.93 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 4.08 Å van-der-waals P 6 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 231 ASP C 4.75 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA B 4.11 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CG 3.54 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 4.41 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 229 PRO CA 4.17 Å van-der-waals P 5 U N3 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CB B 4.23 Å van-der-waals P 6 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CB 3.19 Å van-der-waals P 5 U O4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 3.41 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CD2B 4.18 Å van-der-waals P 5 U O2 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS N B 4.52 Å van-der-waals P 6 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CE1B 3.56 Å van-der-waals P 5 U C5 3VAGP00 Lig113
P26368_linker1 3VAG A 227 ARG CG 4.57 Å van-der-waals P 5 U C4 3VAGP00 Lig113
P26368_linker1 3VAG A 230 HIS CA B 4.62 Å van-der-waals P 5 U N3 3VAGP00 Lig113