Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAG | B | 228 | ARG | C | 4.71 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CB | 4.18 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.07 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.07 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CA | 4.68 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 4.71 Å | van-der-waals | E | 5 | U | C2' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CA | 4.16 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 4.74 Å | van-der-waals | E | 6 | U | C5 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CB | 3.36 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD2 | 4.03 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 3.87 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CA | 3.93 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | C | 3.76 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 3.86 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | O | 3.83 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | C | 4.24 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CA | 3.39 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | N | 4.47 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 4.97 Å | van-der-waals | E | 5 | U | C1' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.72 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.01 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 4.37 Å | van-der-waals | E | 5 | U | N1 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.52 Å | van-der-waals | E | 5 | U | C1' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | C | 3.66 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 4.98 Å | van-der-waals | E | 5 | U | N1 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | CG | 4.43 Å | van-der-waals | E | 6 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 3.76 Å | van-der-waals | E | 5 | U | C2' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 3.91 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 4.36 Å | van-der-waals | E | 5 | U | C6 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | N | 4.63 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CB | 4.73 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 4.91 Å | van-der-waals | E | 5 | U | C6 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | C | 4.36 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | CE | 4.64 Å | van-der-waals | P | 4 | U | C4 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 3.93 Å | van-der-waals | E | 5 | U | C5 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 4.15 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | NZ | 2.87 Å | hbond | P | 4 | U | O4 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | CE | 4.78 Å | van-der-waals | P | 4 | U | N3 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 3.74 Å | van-der-waals | E | 5 | U | C5 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | CE | 3.69 Å | van-der-waals | P | 4 | U | O4 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CG | 3.69 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 4.66 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | NZ | 3.85 Å | van-der-waals | P | 4 | U | C4 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CB | 4.21 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | 3.64 Å | stack | E | 5 | U | 3VAGE00 | Lig113 | ||
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 4.64 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | CB | 3.99 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | C | 4.67 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 4.25 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD1 | 3.82 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CD | 4.55 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | N | 4.44 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CB | 4.72 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 3.85 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 4.17 Å | van-der-waals | E | 5 | U | N1 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | C | 4.92 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CB | 3.91 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 3.55 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 3.97 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 4.73 Å | van-der-waals | E | 5 | U | C6 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.59 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CB | 4.97 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 3.92 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 4.01 Å | van-der-waals | E | 5 | U | C2' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 3.9 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | C | 4.93 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | NZ | 4.04 Å | van-der-waals | P | 4 | U | N3 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CA | 4.92 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CB | 4.19 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | C | 4.79 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD2 | 4.9 Å | van-der-waals | E | 6 | U | C5 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 3.99 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CA | 4.11 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 4.1 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | O | 4.67 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | N | 4.98 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 4.7 Å | van-der-waals | E | 5 | U | C5 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CB | 4.45 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 3.82 Å | van-der-waals | E | 5 | U | C6 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 3.2 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | O | 4.07 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CE1 | 3.86 Å | van-der-waals | E | 5 | U | N1 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD2 | 4.33 Å | van-der-waals | E | 6 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | C | 4.99 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 3.91 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CA | 4.12 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | CG | 3.23 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | O | 4.84 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | O | 3.61 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | O | 4.05 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 4.98 Å | van-der-waals | E | 5 | U | C2' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CB | 4.89 Å | van-der-waals | E | 6 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CG | 4.57 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | O | 3.13 Å | hbond | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CA | 4.64 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | N | 3.22 Å | hbond | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | C | 4.01 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 4.24 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CA | 4.73 Å | van-der-waals | E | 6 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CB | 3.82 Å | van-der-waals | E | 6 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | CA | 4.14 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 3.62 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 228 | ARG | C | 4.2 Å | van-der-waals | E | 5 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CG | 4.71 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD1 | 3.99 Å | van-der-waals | E | 6 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CG | 4.72 Å | van-der-waals | E | 6 | U | N3 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | C | 4.82 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 3.96 Å | van-der-waals | E | 5 | U | N1 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 260 | LYS | CD | 4.55 Å | van-der-waals | P | 4 | U | O4 | 3VAGP00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 3.78 Å | van-der-waals | E | 5 | U | C2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 3.5 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CB | 4.07 Å | van-der-waals | E | 5 | U | O2 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 4.49 Å | van-der-waals | E | 5 | U | N1 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD1 | 2.97 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CA | 4.62 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | OD2 | 3.56 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | CB | 4.97 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 4.47 Å | van-der-waals | E | 5 | U | C5 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CB | 3.24 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 231 | ASP | CG | 4.03 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | ND1 | 4.35 Å | van-der-waals | E | 5 | U | C1' | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 227 | ARG | CG | 4.74 Å | van-der-waals | E | 5 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CA | 3.87 Å | van-der-waals | E | 6 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 229 | PRO | CA | 4.49 Å | van-der-waals | E | 6 | U | C4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | NE2 | 4.05 Å | van-der-waals | E | 5 | U | C6 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | CD2 | 4.15 Å | van-der-waals | E | 5 | U | O4 | 3VAGE00 | Lig113 |
P26368_linker1 | 3VAG | B | 230 | HIS | N | 3.06 Å | hbond | E | 5 | U | O2 | 3VAGE00 | Lig113 |