Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAI | A | 231 | ASP | OD1 | 3.44 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CG | 4.03 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | N B | 3.49 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | OD1 | 4.28 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | OD2 | 4.96 Å | van-der-waals | P | 6 | U | C5 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | C B | 4.08 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CA | 4 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CB B | 4.46 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CG A | 4.86 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CB A | 4.66 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CB A | 4.55 Å | van-der-waals | P | 6 | U | C5 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | OD1 | 4.84 Å | van-der-waals | P | 6 | U | C5 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | C | 3.91 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CB | 4.02 Å | van-der-waals | P | 6 | U | N3 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CB | 3.46 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | OD2 | 3.5 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | C | 4.98 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CA | 4.88 Å | van-der-waals | P | 6 | U | N3 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CG | 4.84 Å | van-der-waals | P | 6 | U | N3 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CA A | 4.92 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CG | 3.17 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | OD2 | 4.4 Å | van-der-waals | P | 6 | U | N3 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | 4 Å | stack | P | 6 | U | 3VAIP00 | Lig208 | ||
P26368_linker1 | 3VAI | A | 231 | ASP | OD2 | 4.05 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CG | 4.92 Å | van-der-waals | P | 6 | U | C5 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | ND1A | 4.68 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CA A | 4.04 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CA | 4.51 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CG | 4.68 Å | van-der-waals | P | 6 | U | N3 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CB | 3.97 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CA B | 4.18 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | N A | 4.65 Å | van-der-waals | P | 6 | U | C5 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | O | 4.74 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | N B | 4.25 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | N A | 4.23 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | CG | 4.8 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CA | 3.84 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 229 | PRO | C | 4.7 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | N B | 4.68 Å | van-der-waals | P | 6 | U | C5 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CB | 4.97 Å | van-der-waals | P | 6 | U | N3 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | N A | 3.48 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | N | 3.11 Å | hbond | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | CB A | 4.03 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 230 | HIS | C A | 4.05 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CB | 4.43 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | N | 4.31 Å | van-der-waals | P | 6 | U | C4 | 3VAIP00 | Lig208 |
P26368_linker1 | 3VAI | A | 231 | ASP | CB | 3.34 Å | van-der-waals | P | 6 | U | O4 | 3VAIP00 | Lig208 |