Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 4.11 Å | van-der-waals | P | 6 | C | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 4.8 Å | van-der-waals | P | 6 | C | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 3.95 Å | van-der-waals | P | 7 | U | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CB | 4.03 Å | van-der-waals | P | 6 | C | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CA | 4.13 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CB | 3.54 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 4.73 Å | van-der-waals | P | 7 | U | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 3.48 Å | van-der-waals | P | 7 | U | C2 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 3.57 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CA | 4.65 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CB | 4.04 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | N | 4.56 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CG | 4.77 Å | van-der-waals | P | 6 | C | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 3.58 Å | van-der-waals | P | 7 | U | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 4.3 Å | van-der-waals | P | 7 | U | O2 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 3.5 Å | van-der-waals | P | 7 | U | O4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 3.55 Å | van-der-waals | P | 7 | U | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | N | 3.72 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 4.9 Å | van-der-waals | P | 7 | U | C5 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CB | 4.73 Å | van-der-waals | P | 7 | U | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | CA | 4.48 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | 3.39 Å | stack | P | 5 | BRU | 3VAJP00 | Lig108 | ||
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 2.63 Å | hbond | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | N | 3.66 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CA | 4.93 Å | van-der-waals | P | 6 | C | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 4.8 Å | van-der-waals | P | 7 | U | N1 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 4.52 Å | van-der-waals | P | 7 | U | C2 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 3.77 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | N | 4.96 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 4.99 Å | van-der-waals | P | 6 | C | C5 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | N | 4.97 Å | van-der-waals | P | 6 | C | C5 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 2.67 Å | hbond | P | 7 | U | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 3.43 Å | van-der-waals | P | 7 | U | O2 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 4.3 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | CB | 4.61 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CB | 4.64 Å | van-der-waals | P | 7 | U | O4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CB | 4.1 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 4.78 Å | van-der-waals | P | 6 | C | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 230 | HIS | C | 4.55 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CA | 4.44 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 4.3 Å | van-der-waals | P | 7 | U | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 4.34 Å | van-der-waals | P | 7 | U | O2 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 3.17 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | CG | 4.84 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 4.39 Å | van-der-waals | P | 7 | U | C2 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | C | 4.15 Å | van-der-waals | P | 6 | C | N4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD1 | 4.44 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | CG | 4.08 Å | van-der-waals | P | 7 | U | O4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 229 | PRO | C | 4.99 Å | van-der-waals | P | 6 | C | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | A | 231 | ASP | OD2 | 4.68 Å | van-der-waals | P | 7 | U | O4 | 3VAJP00 | Lig108 |