Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAJ | B | 229 | PRO | CA | 4.75 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CB | 3.61 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 260 | LYS | NZ | 4.64 Å | van-der-waals | P | 4 | U | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CB | 4.82 Å | van-der-waals | E | 7 | U | O4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CA | 4.39 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD1 | 4.04 Å | van-der-waals | E | 6 | C | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 260 | LYS | CD | 4.24 Å | van-der-waals | P | 4 | U | O4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 4.06 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 4.8 Å | van-der-waals | E | 7 | U | O2 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD1 | 2.68 Å | hbond | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD1 | 4.75 Å | van-der-waals | E | 7 | U | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CA | 4.23 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | N | 4.94 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CB | 4.1 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CG | 4.04 Å | van-der-waals | E | 7 | U | O4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 230 | HIS | C | 4.52 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 3.24 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | N | 3.63 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CB | 3.95 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 3.71 Å | van-der-waals | E | 7 | U | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD1 | 3.79 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 230 | HIS | CB | 4.71 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CG | 3 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 230 | HIS | 3.39 Å | stack | E | 5 | BRU | 3VAJE00 | Lig108 | ||
P26368_linker1 | 3VAJ | B | 260 | LYS | CE | 4.45 Å | van-der-waals | P | 4 | U | N3 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CG | 4.52 Å | van-der-waals | E | 6 | C | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CG | 4.9 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 3.4 Å | van-der-waals | E | 7 | U | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CA | 4.97 Å | van-der-waals | E | 6 | C | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 260 | LYS | NZ | 3.94 Å | van-der-waals | P | 4 | U | O4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 230 | HIS | N | 4.59 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CG | 4.86 Å | van-der-waals | E | 6 | C | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 260 | LYS | CE | 4.17 Å | van-der-waals | P | 4 | U | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | CB | 4.03 Å | van-der-waals | E | 6 | C | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 4.56 Å | van-der-waals | E | 7 | U | C2 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CG | 4.71 Å | van-der-waals | E | 7 | U | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD1 | 4.71 Å | van-der-waals | E | 7 | U | O4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 260 | LYS | NZ | 4.76 Å | van-der-waals | P | 4 | U | C4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 230 | HIS | CA | 4.48 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CG | 4.43 Å | van-der-waals | E | 7 | U | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 260 | LYS | CE | 3.15 Å | hbond | P | 4 | U | O4 | 3VAJP00 | Lig108 |
P26368_linker1 | 3VAJ | B | 230 | HIS | N | 3.72 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | CG | 4.12 Å | van-der-waals | E | 6 | C | C4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 229 | PRO | C | 4.22 Å | van-der-waals | E | 6 | C | N4 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 4.33 Å | van-der-waals | E | 6 | C | N3 | 3VAJE00 | Lig108 |
P26368_linker1 | 3VAJ | B | 231 | ASP | OD2 | 3.14 Å | hbond | E | 7 | U | O4 | 3VAJE00 | Lig108 |