Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAK | A | 230 | HIS | C B | 3.93 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | C A | 4.99 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CA A | 4.71 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | 4.22 Å | stack | P | 6 | U | 3VAKP00 | Lig54 | ||
P26368_linker1 | 3VAK | A | 231 | ASP | OD1 | 4.74 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CB | 4.43 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CG A | 4.97 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CA B | 4.89 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N B | 3.34 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CG | 4.79 Å | van-der-waals | P | 6 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | OD2 | 4.9 Å | van-der-waals | P | 6 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N B | 4.5 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CB A | 4.29 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CA | 4.74 Å | van-der-waals | P | 6 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | OD2 | 4.85 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N A | 3.33 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CB | 3.41 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N A | 4.47 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CG | 4.8 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N B | 4.06 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CA | 3.75 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N A | 4.99 Å | van-der-waals | P | 6 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CG | 4.92 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | OD1 | 3.92 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | OD2 | 4.27 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | C | 3.77 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | C | 4.72 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | N | 2.97 Å | hbond | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | N A | 4.03 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 232 | TYR | N | 4.86 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | O | 4.56 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | OD2 | 3.73 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | N | 4.16 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CG | 3.45 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CG | 4.28 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | N | 4.93 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CA B | 4.04 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CB A | 3.86 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CB | 3.87 Å | van-der-waals | P | 6 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CA | 4.42 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CB A | 4.44 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CA A | 3.88 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CB B | 4.92 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | C A | 3.91 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CB B | 4.44 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 230 | HIS | CA A | 4.98 Å | van-der-waals | P | 6 | U | C5 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CB | 3.88 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CA | 4.95 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CA | 3.94 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | CB | 4.89 Å | van-der-waals | P | 6 | U | C2 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 229 | PRO | C | 4.55 Å | van-der-waals | P | 6 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | A | 231 | ASP | CB | 3.37 Å | van-der-waals | P | 6 | U | O4 | 3VAKP00 | Lig54 |