Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAK | B | 231 | ASP | OD2 | 4.7 Å | van-der-waals | E | 6 | U | C5 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | C | 4.94 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | CE | 3.54 Å | van-der-waals | P | 4 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | N | 4.47 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | CG | 3.22 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CB | 3.44 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | CG | 4.06 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | OD1 | 3.85 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | OD2 | 4.36 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | CB | 4.13 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CA | 4.73 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | NZ | 4.05 Å | van-der-waals | P | 4 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | CE | 4.75 Å | van-der-waals | P | 4 | U | N3 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | C | 3.77 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | N | 3.25 Å | hbond | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CA | 4.49 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | N | 3.17 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | C | 4.66 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | O | 4.71 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | OD1 | 3 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | CB | 4.88 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | CA | 4.21 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | CG | 4.53 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | CA | 3.9 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | NZ | 2.75 Å | hbond | P | 4 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CB | 3.85 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CA | 3.91 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | CD | 4.54 Å | van-der-waals | P | 4 | U | O4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CB | 3.95 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CG | 4.8 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | CA | 4.89 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | N | 4.96 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | CB | 4.93 Å | van-der-waals | E | 6 | U | C5 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | C | 4.04 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | N | 4.69 Å | van-der-waals | E | 6 | U | C5 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | CE | 4.54 Å | van-der-waals | P | 4 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | CB | 4.11 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CG | 4.82 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 260 | LYS | NZ | 3.77 Å | van-der-waals | P | 4 | U | C4 | 3VAKP00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | OD2 | 3.38 Å | van-der-waals | E | 6 | U | O4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 229 | PRO | CB | 4.91 Å | van-der-waals | E | 6 | U | C2 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | 3.63 Å | stack | E | 5 | BRU | 3VAKE00 | Lig54 | ||
P26368_linker1 | 3VAK | B | 231 | ASP | OD1 | 4.06 Å | van-der-waals | E | 6 | U | N3 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 231 | ASP | OD2 | 3.9 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |
P26368_linker1 | 3VAK | B | 230 | HIS | N | 4.06 Å | van-der-waals | E | 6 | U | C4 | 3VAKE00 | Lig54 |