Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAM | A | 229 | PRO | CB | 3.89 Å | van-der-waals | P | 6 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CA | 4.89 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | C | 3.94 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | C | 4.59 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CB | 3.36 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CB | 4.9 Å | van-der-waals | P | 6 | U | C2 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | N | 4.05 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CB | 3.82 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | 3.48 Å | stack | P | 6 | U | 3VAMP00 | Lig113 | ||
P26368_linker1 | 3VAM | A | 231 | ASP | C | 4.78 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | CA | 4.01 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CA | 4.43 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | CA | 4.88 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | N | 2.97 Å | hbond | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | OD1 | 3.85 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CA | 4.83 Å | van-der-waals | P | 6 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CG | 4.58 Å | van-der-waals | P | 6 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CA | 3.71 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 232 | TYR | N | 4.85 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | N | 4.15 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CB | 3.25 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | O | 4.68 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CA | 3.94 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | N | 4.91 Å | van-der-waals | P | 6 | U | C5 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | OD1 | 4.59 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CG | 3.93 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | CB | 4.86 Å | van-der-waals | P | 6 | U | C5 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CG | 4.76 Å | van-der-waals | P | 6 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | N | 4.45 Å | van-der-waals | P | 6 | U | C5 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | C | 3.8 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | 3.53 Å | stack | P | 5 | BRU | 3VAMP00 | Lig113 | ||
P26368_linker1 | 3VAM | A | 231 | ASP | OD2 | 3.9 Å | van-der-waals | P | 6 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CG | 4.74 Å | van-der-waals | P | 6 | U | C5 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | OD2 | 3.11 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CB | 4.87 Å | van-der-waals | P | 6 | U | C5 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CG | 3.16 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 229 | PRO | CG | 4.71 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CB | 4.28 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | N | 3.3 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | CB | 4.83 Å | van-der-waals | P | 6 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 230 | HIS | CB | 4.37 Å | van-der-waals | P | 6 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | OD2 | 4.89 Å | van-der-waals | P | 6 | U | C2 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | OD2 | 4.35 Å | van-der-waals | P | 6 | U | C5 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | A | 231 | ASP | OD2 | 3.53 Å | van-der-waals | P | 6 | U | C4 | 3VAMP00 | Lig113 |