Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAM | B | 230 | HIS | 3.65 Å | stack | E | 5 | BRU | 3VAME00 | Lig113 | ||
P26368_linker1 | 3VAM | B | 229 | PRO | CA | 4.66 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD1 | 4.06 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | CA | 4.05 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CA | 3.84 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | CB | 4.73 Å | van-der-waals | E | 6 | U | C5 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | CB | 4.13 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | C | 4.54 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD2 | 3.63 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | N | 3.11 Å | hbond | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | CD | 4.54 Å | van-der-waals | P | 4 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD2 | 4.35 Å | van-der-waals | E | 6 | U | C5 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | C | 3.92 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | CB | 4.98 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | CE | 4.72 Å | van-der-waals | P | 4 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | CA | 4.76 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD2 | 3.13 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | C | 4.75 Å | hbond | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | CG | 3.08 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | N | 3.92 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CB | 3.86 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 232 | TYR | N | 4.99 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD1 | 4.91 Å | van-der-waals | E | 7 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | C | 3.69 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | N | 4.31 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | CG | 3.91 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD2 | 4.17 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | N | 4.48 Å | van-der-waals | E | 6 | U | C5 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | CA | 3.84 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CB | 4.93 Å | van-der-waals | E | 6 | U | C2 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | O | 4.6 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | CE | 4.43 Å | van-der-waals | P | 4 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | NZ | 3.91 Å | van-der-waals | P | 4 | U | C4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | CG | 4.87 Å | van-der-waals | E | 6 | U | C5 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD1 | 3.84 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CA | 4.39 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CB | 3.4 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | CE | 3.43 Å | van-der-waals | P | 4 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | N | 4.86 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | N | 3.1 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | CB | 3.99 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CB | 3.93 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 230 | HIS | CB | 4.8 Å | van-der-waals | E | 6 | U | C4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | NZ | 2.92 Å | hbond | P | 4 | U | O4 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CG | 4.7 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 260 | LYS | NZ | 4.14 Å | van-der-waals | P | 4 | U | N3 | 3VAMP00 | Lig113 |
P26368_linker1 | 3VAM | B | 229 | PRO | CG | 4.73 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | 3.01 Å | stack | E | 6 | U | 3VAME00 | Lig113 | ||
P26368_linker1 | 3VAM | B | 231 | ASP | CG | 4.43 Å | van-der-waals | E | 6 | U | N3 | 3VAME00 | Lig113 |
P26368_linker1 | 3VAM | B | 231 | ASP | OD1 | 3 Å | van-der-waals | E | 6 | U | O4 | 3VAME00 | Lig113 |