Linker Name | PDB ID | Linker Chain | Amino Acid Position | Amino Acid | Amino Acid Atom | Contact Distance | Interaction Type | Nucleotide Chain | Nucleotide Position | Nucleotide | Nucleotide Atom | Ligand Structurename | Ligand ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P26368_linker1 | 3VAF | A | 230 | HIS | N | 3.1 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD2 | 4.05 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CG | 4.75 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CG A | 4.84 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | N | 4.34 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CA | 4.54 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | C | 3.62 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD1 | 4.64 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CA B | 4.64 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CB A | 4.3 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CB | 3.46 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | C | 4.81 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CB | 3.91 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CA B | 3.76 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | 4.05 Å | stack | P | 6 | U | 3VAFP00 | Lig54 | ||
P26368_linker1 | 3VAF | A | 230 | HIS | N | 4.77 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD1 | 3.42 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CG | 3.95 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CB A | 4.22 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CG | 3.2 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | C | 4.75 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | N | 4.83 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CB B | 4.11 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CA | 3.62 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | C | 4.39 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD2 | 4.43 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CA A | 4.55 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD2 | 4.8 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CB | 4.3 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 232 | TYR | N | 4.86 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CG | 4.86 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CB | 4.8 Å | van-der-waals | P | 6 | U | C2 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | O | 4.87 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CA A | 3.67 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CA | 4.28 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CB B | 4.76 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CB | 3.3 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CB A | 3.67 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CA | 3.83 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD1 | 4.17 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | C | 3.7 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CA A | 4.9 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | O | 4.46 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | N | 4.9 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CG | 4.74 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | N | 2.78 Å | hbond | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | CB B | 4.68 Å | van-der-waals | P | 6 | U | C5 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CA | 4.8 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | N | 3.98 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CB | 4.79 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 229 | PRO | CB | 3.8 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | OD2 | 3.63 Å | van-der-waals | P | 6 | U | O4 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 231 | ASP | CG | 4.6 Å | van-der-waals | P | 6 | U | N3 | 3VAFP00 | Lig54 |
P26368_linker1 | 3VAF | A | 230 | HIS | N | 3.84 Å | van-der-waals | P | 6 | U | C4 | 3VAFP00 | Lig54 |