Toggle column: Linker Name PDB ID Linker Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Chain Nucleotide Position Nucleotide Nucleotide Atom Ligand Structurename Ligand ID
Linker Name PDB ID Linker Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Chain Nucleotide Position Nucleotide Nucleotide Atom Ligand Structurename Ligand ID
Q4DY32_linker1 5OPT h 136 ALA CA 3.9 Å van-der-waals E 814 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CB 4.87 Å van-der-waals E 825 C C2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL O 3.77 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR CB 4.06 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 4.98 Å van-der-waals E 815 G OP1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO N 4.68 Å van-der-waals E 825 C O4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CD 3.93 Å van-der-waals E 825 C O4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 3.2 Å ionic E 816 C OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS O 4.58 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CD 4.21 Å ionic E 816 C OP1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL CG1 4.9 Å van-der-waals E 825 C C2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR OG1 4.38 Å van-der-waals E 815 G C5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CD 4.54 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR CA 3.96 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 3.64 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR OG1 4.23 Å van-der-waals E 815 G P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL C 4.28 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS C 4.98 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 3.56 Å van-der-waals E 815 G P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL CB 4.69 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS N 4.9 Å van-der-waals E 814 C O3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR N 3.41 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO N 4.97 Å van-der-waals E 825 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CD 3.41 Å ionic E 816 C OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS N 4.19 Å van-der-waals E 814 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS N 4.36 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 3.17 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CD 4.97 Å van-der-waals E 825 C C2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA CB 4.13 Å van-der-waals E 814 C C2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 4.15 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CB 3.8 Å van-der-waals E 825 C O4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 4.58 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CD 4.13 Å van-der-waals E 825 C C1' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS NZ 4.04 Å van-der-waals E 819 G O6 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.68 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR N 4.51 Å van-der-waals E 815 G C5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS N 4.71 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL O 4.64 Å van-der-waals E 825 C N3 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 4.6 Å van-der-waals E 815 G P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR OG1 3.03 Å hbond E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR N 4.75 Å van-der-waals E 815 G P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.69 Å van-der-waals E 815 G O3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CE 4.63 Å van-der-waals E 819 G O6 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 4.97 Å van-der-waals E 814 C C1' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CA 4.66 Å van-der-waals E 825 C O4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR OG1 4.88 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CG 3.84 Å ionic E 816 C OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA CA 4.39 Å van-der-waals E 814 C C2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 144 PRO CG 4.83 Å van-der-waals E 820 U O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 4.63 Å van-der-waals E 814 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 2.96 Å hbond E 814 C O3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS C 4.87 Å van-der-waals E 815 G C5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS NZ 4.44 Å van-der-waals E 819 G C6 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CB 4.39 Å van-der-waals E 825 C C4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 4.14 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 3.46 Å van-der-waals E 814 C C2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CG 4.93 Å ionic E 816 C P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO N 4.61 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL CG2 4.19 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 3.72 Å van-der-waals E 814 C C3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.8 Å van-der-waals E 815 G C3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 134 VAL N 4.7 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO N 4.57 Å van-der-waals E 825 C C1' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 134 VAL O 4.92 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR N 4.89 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 4.72 Å van-der-waals E 814 C C3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 4.73 Å van-der-waals E 815 G C5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CB 4.24 Å van-der-waals E 825 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 3.02 Å van-der-waals E 814 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CD 4.82 Å van-der-waals E 825 C N1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 4.13 Å van-der-waals E 815 G C5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.71 Å ionic E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS C 4.93 Å van-der-waals E 815 G P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS NZ 4.06 Å van-der-waals E 819 G N1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 4.14 Å van-der-waals E 814 C C2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CG 4.69 Å van-der-waals E 825 C C4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 134 VAL CA 4.89 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CB 4.27 Å van-der-waals E 825 C C1' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CA 4.68 Å van-der-waals E 825 C C1' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CE 4.77 Å ionic E 816 C OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 4.45 Å van-der-waals E 816 C OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.47 Å ionic E 816 C OP1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CG 3.79 Å van-der-waals E 825 C O4' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA CB 3.46 Å van-der-waals E 814 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 4.83 Å van-der-waals E 814 C O3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 138 THR OG1 4.49 Å van-der-waals E 815 G OP1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CA 4.48 Å van-der-waals E 815 G P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CG 4.43 Å van-der-waals E 825 C C1' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL CG1 4.23 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.28 Å van-der-waals E 815 G C5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 135 PRO CA 4.45 Å van-der-waals E 825 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 4.1 Å van-der-waals E 814 C O3' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA C 3.45 Å van-der-waals E 814 C O2' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 134 VAL C 4.61 Å van-der-waals E 825 C O2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS C 3.71 Å van-der-waals E 815 G OP2 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL CG1 4.65 Å van-der-waals E 825 C N3 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CD 4.34 Å ionic E 816 C P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CG 4.99 Å ionic E 816 C OP1 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 137 LYS CB 4.22 Å ionic E 816 C P 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 136 ALA O 3.84 Å van-der-waals E 815 G O5' 5OPTE00 Lig58
Q4DY32_linker1 5OPT h 133 VAL O 4.44 Å van-der-waals E 825 C C2 5OPTE00 Lig58