2VODC00

Structural information

  • Experiment ID: Exp_2VOD
  • Experiment Type : X-ray Diffraction
  • PubMed ID : 18547518
  • Ligand ID: Lig34
  • PDB ID : 2VOD
  • PDB Chain ID : C

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P05455 408

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig34 7 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
2VOD A 57 ARG NE 4.56 Å van-der-waals N1 U -2 2VODC00
2VOD A 57 ARG CG 3.85 Å ionic OP2 U -1 2VODC00
2VOD A 55 PHE CA 3.95 Å van-der-waals OP1 U -1 2VODC00
2VOD A 57 ARG NE 3.38 Å hbond O4' U -2 2VODC00
2VOD A 57 ARG NE 4.81 Å van-der-waals C5' U -2 2VODC00

Complete list of contacts