5DDPB00

Structural information

  • Experiment ID: Exp_5DDP
  • Experiment Type : X-ray Diffraction
  • PubMed ID : 26655897
  • Ligand ID: Lig85
  • PDB ID : 5DDP
  • PDB Chain ID : B

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P09012 282

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig85 61 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
5DDP C 91 ASP OD2 3.6 Å van-der-waals C2 C 41 5DDPB00
5DDP C 49 LYS C 3.53 Å van-der-waals O2' G 38 5DDPB00
5DDP C 87 LYS CB 4.46 Å van-der-waals C4 C 39 5DDPB00
5DDP C 89 ASP N 4.18 Å van-der-waals N6 A 40 5DDPB00
5DDP C 12 TYR CE1 3.85 Å van-der-waals C6 C 39 5DDPB00

Complete list of contacts