5GMKE00

Structural information

  • Experiment ID: Exp_5GMK
  • Experiment Type : EM
  • PubMed ID : 27445308
  • Ligand ID: Lig41
  • PDB ID : 5GMK
  • PDB Chain ID : E

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P40567 111
Q12046 339

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig142 1175 RNA
Lig41 112 RNA
Lig76 15 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
5GMK R 120 TYR C 3.72 Å van-der-waals O6 G 39 5GMKE00
5GMK R 75 PHE CD2 3.97 Å hbond C8 A 35 5GMKE00
5GMK R 223 VAL CA 4.52 Å van-der-waals N3 U 38 5GMKE00
5GMK R 121 ARG CB 4.63 Å van-der-waals C2 G 39 5GMKE00
5GMK R 117 PHE CD1 4.88 Å van-der-waals C4 G 39 5GMKE00

Complete list of contacts