5GMKL00

Structural information

  • Experiment ID: Exp_5GMK
  • Experiment Type : EM
  • PubMed ID : 27445308
  • Ligand ID: Lig142
  • PDB ID : 5GMK
  • PDB Chain ID : L

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P40567 111
Q12046 339

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig142 1175 RNA
Lig41 112 RNA
Lig76 15 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
5GMK R 151 LEU CG 4.23 Å van-der-waals P G 78 5GMKL00
5GMK a 68 GLN CG 3.93 Å van-der-waals C4' A 1108 5GMKL00
5GMK a 40 ASN CG 4.88 Å van-der-waals P G 1097 5GMKL00
5GMK R 209 ASP OD2 4.71 Å van-der-waals C2' G 78 5GMKL00
5GMK a 105 LYS N 3.12 Å hbond N3 C 1107 5GMKL00

Complete list of contacts