5GMKN00

Structural information

  • Experiment ID: Exp_5GMK
  • Experiment Type : EM
  • PubMed ID : 27445308
  • Ligand ID: Lig76
  • PDB ID : 5GMK
  • PDB Chain ID : N

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P40567 111
Q12046 339

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig142 1175 RNA
Lig41 112 RNA
Lig76 15 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
5GMK R 180 ASN CA 4.52 Å van-der-waals O2' U 111 5GMKN00
5GMK R 179 LYS CA 4.5 Å van-der-waals O2 U 111 5GMKN00
5GMK R 183 PHE CE2 4.41 Å van-der-waals O2 U 113 5GMKN00
5GMK R 229 ASP CA 4.25 Å van-der-waals C5 U 113 5GMKN00
5GMK R 179 LYS CB 4.52 Å van-der-waals O2 U 111 5GMKN00

Complete list of contacts