Q99181_RRM1

Protein information

  • Protein ID: Q99181
  • Protein Name: Protein HSH49
  • Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
  • Gene Name: HSH49

Domain information

  • Pfam ID: PF00076
  • Pfam Clan Name: RRM
  • Domain Range: 11 - 82
  • Domain Length: 72

Domain Sequence

  • VYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIK

Available Structures for this domain - 14 

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_5GM6 5GM6e01 EM Lig197 Contacts
Exp_5LSB 5LSBF01 X-ray Diffraction No contacts
Exp_5LSB 5LSBC01 X-ray Diffraction No contacts
Exp_5LSB 5LSBA01 X-ray Diffraction No contacts
Exp_5LSL 5LSLD01 X-ray Diffraction No contacts
Exp_5LSL 5LSLC01 X-ray Diffraction No contacts
Exp_5LSL 5LSLB01 X-ray Diffraction No contacts
Exp_5LSL 5LSLA01 X-ray Diffraction No contacts
Exp_5NRL 5NRLR01 EM Lig107 Contacts
Exp_5ZWM 5ZWM401 EM Lig26 Contacts
Exp_5ZWO 5ZWO401 EM Lig33 Contacts
Exp_6G90 6G90R01 EM Lig52 Contacts
Exp_7OQB 7OQBR01 EM Lig136 Contacts
Exp_7OQE 7OQER01 EM Lig28 Contacts

Ligands tested for Binding - 7 

Ligand ID Ligand Type Ligand Sequence
Lig107 RNA GUAUGUCUAAAGUUAUGGCCACGUUUCAAAUGCGUGCUUUUUUUUUAAAACUUAUGCUCUUAUUUACUAACAAAAUCAACAUGCUAUUGAACUAG
Lig136 RNA AUGGAUUCUGGUAUGUUCUAGCGCUUGCACCAUCCCAUUUAACUGUAAGAAGAAUUGCACGGUCCCAAUUGCUCGAGAGAUUUCUCUUUUACCUUUUUUUACUAUUUUUCACUCUCCCAUAACCUCCUAUAUUGACUGAUCUGUAAUAACCACGAUAUUAUUGGAAUAAAUAGGGGCUUGAAAUUUGGAAAAAAAAAAAAAACUGAAAUAUUUUCGUGAUAAGUGAUAGUGAUAUUCUUCUUUUAUUUGCUACUGUUACUAAGUCUCAUGUACUACAUCGAUUGCUUCAUUCUUUUUGUUGCUAUAUUAUAUGUUUAG
Lig197 RNA AAAAAAAAAAAAAANNNAAAAAANNAAAACUAGAUACUAACACAUUUAAUUUUUUUUUGUU
Lig26 RNA AAAAAAAAAAAACUAGAUACUAACACAUUUAAUUUUUUUUUGUU
Lig28 RNA AUGGAUUCUGGUAUGUUCUAGCGCUUGCACCAUCCCAUUUAACUGUAAGAAGAAUUGCACGGUCCCAAUUGCUCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAUUUCUCUUUUACCUUUUUUUACUAUUUUUCACUCUCCCAUAACCUCCUAUAUUGACUGAUCUGUAAUAACCACGAUAUUAUUGGAAUAAAUAGGGGCUUGAAAUUUGGAAAAAAAAAAAAAACUGAAAUAUUUUCGUGAUAAGUGAUAGUGAUAUUCUUCUUUUAUUUGCUACUGUUACUAAGUCUCAUGUACUACAUCGAUUGCUUCAUUCUUUUUGUUGCUAUAUUAUAUGUUUAG
Lig33 RNA AAAAAAAAUUUUUUUUAAAAAAAAAAAACUAGAUACUAACACAUUUAAUUUUUUUUUGUU
Lig52 RNA AGGUAUGUCUAACUUCUCUUAUUUACAAACAAAAUCAA