Exp_5GM6

Experiment information

  • Experiment ID: Exp_5GM6
  • PubMed ID : 27445306
  • Experiment Type : EM
  • PDB ID : 5GM6

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P40565 148
Q12046 339
Q99181 213

RRM domains involved in this Experiment

RRM Entryname Sequence Range RRM Structurename
P40565_RRM1 33 - 103 5GM6V01
Q12046_RRM1 149 - 206 5GM6R01, 5GM6R01
Q99181_RRM1 11 - 82 5GM6e01
Q99181_RRM2 110 - 179 5GM6e02

Binding Information from Structures

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_5GM6 5GM6R01 EM Lig105 Contacts
Exp_5GM6 5GM6R01 EM Lig41 Contacts
Exp_5GM6 5GM6V01 EM Lig197 Contacts
Exp_5GM6 5GM6e01 EM Lig197 Contacts
Exp_5GM6 5GM6e02 EM Lig197 Contacts

Ligands tested for Binding - 3 

Ligand ID Ligand Type Ligand Sequence
Lig105 RNA AAUUUUUAAGGUAUGUAUUUUUUUU
Lig197 RNA AAAAAAAAAAAAAANNNAAAAAANNAAAACUAGAUACUAACACAUUUAAUUUUUUUUUGUU
Lig41 RNA GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUAUUUCGUUUU

Ligand Structures from this Experiment - 3 

Ligand Structurename PDB ID Chain ID Ligand ID
5GM6E00 5GM6 E Lig41
5GM6M00 5GM6 M Lig197
5GM6N00 5GM6 N Lig105