5Y88E00

Structural information

  • Experiment ID: Exp_5Y88
  • Experiment Type : EM
  • PubMed ID : 28919079
  • Ligand ID: Lig96
  • PDB ID : 5Y88
  • PDB Chain ID : E

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P40567 111
Q12046 339

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig142 1175 RNA
Lig41 112 RNA
Lig96 38 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
5Y88 N 174 ARG NH1 4.34 Å van-der-waals C5' U 15 5Y88E00
5Y88 N 231 ASP CG 4.24 Å van-der-waals C4' U 15 5Y88E00
5Y88 N 230 PRO CB 4.18 Å van-der-waals O4 U 15 5Y88E00
5Y88 N 174 ARG CD 4.79 Å van-der-waals C2 U 14 5Y88E00
5Y88 N 174 ARG NH2 4.82 Å van-der-waals O2' U 14 5Y88E00

Complete list of contacts