5Y88F00

Structural information

  • Experiment ID: Exp_5Y88
  • Experiment Type : EM
  • PubMed ID : 28919079
  • Ligand ID: Lig142
  • PDB ID : 5Y88
  • PDB Chain ID : F

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P40567 111
Q12046 339

Ligands involved in this Experiment

Ligand ID Ligand Length Ligand Type
Lig142 1175 RNA
Lig41 112 RNA
Lig96 38 RNA

Snapshot of Contacts from this Ligand Structure

PDB ID Amino Acid Chain Amino Acid Position Amino Acid Amino Acid Atom Contact Distance Interaction Type Nucleotide Atom Nucleotide Nucleotide Position Ligand Structurename
5Y88 p 29 THR CG2 4.36 Å van-der-waals N1 A 1108 5Y88F00
5Y88 p 29 THR CG2 4.83 Å van-der-waals C2 A 1108 5Y88F00
5Y88 p 29 THR CG2 4.93 Å van-der-waals C6 A 1108 5Y88F00
5Y88 p 29 THR OG1 4.78 Å van-der-waals N1 A 1108 5Y88F00
5Y88 p 31 TYR CB 3.9 Å van-der-waals N3 C 1107 5Y88F00

Complete list of contacts