Exp_6ICZ

Experiment information

  • Experiment ID: Exp_6ICZ
  • PubMed ID : 30728453
  • Experiment Type : EM
  • PDB ID : 6ICZ

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P08579 225
Q9NW64 420
Q9UNP9 301
Q9Y5S9 174

RRM domains involved in this Experiment

RRM Entryname Sequence Range RRM Structurename
P08579_RRM1 9 - 80 6ICZp01
Q9NW64_RRM1 234 - 299 6ICZO01
Q9UNP9_RRM1 8 - 78 6ICZy01
Q9Y5S9_RRM1 75 - 145 6ICZw01

Binding Information from Structures

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_6ICZ 6ICZO01 EM Lig12 Contacts
Exp_6ICZ 6ICZp01 EM Lig80 Contacts
Exp_6ICZ 6ICZw01 EM No contacts
Exp_6ICZ 6ICZy01 EM Lig80 Contacts

Ligands tested for Binding - 3 

Ligand ID Ligand Type Ligand Sequence
Lig12 RNA GAAUACACGGAAUUCGAGCUCGCCCACUCUUGGAUCGGAAACCCGUCGGCCUCCGAACGNGUAAGAGCCUAGCAUGUAGAACUGGUUACCUGCAGCCCAAGCUUGCGUACACCAUCAGGGUACGUACUAGUACGUACACCAUCAGGGUACGGCUGCACGUCUAGGGCGCAGUAGUCCAGGGUUUCCUUGAUGAUGUCAUACUUAUCCUGUCCCUUUUUUUUCCACAGCUCGCGGUUGAGGACAAACUCUUCGCGGUCUUUCCAGUGGGGAUCC
Lig80 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC
Lig149 RNA GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU

Ligand Structures from this Experiment - 3 

Ligand Structurename PDB ID Chain ID Ligand ID
6ICZF00 6ICZ F Lig149
6ICZG00 6ICZ G Lig12
6ICZH00 6ICZ H Lig80