P08579_RRM1

Protein information

  • Protein ID: P08579
  • Protein Name: U2 small nuclear ribonucleoprotein B''
  • Organism: Homo sapiens
  • Gene Name: SNRPB2

Domain information

  • Pfam ID: PF00076
  • Pfam Clan Name: RRM
  • Domain Range: 9 - 80
  • Domain Length: 72

Domain Sequence

  • IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR

Available Structures for this domain - 22 

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_1A9N 1A9ND01 X-ray Diffraction Lig129 Contacts
Exp_1A9N 1A9NB01 X-ray Diffraction Lig129 Contacts
Exp_5MQF 5MQFX01 EM Lig80 Contacts
Exp_5O9Z 5O9Z101 EM Lig80 Contacts
Exp_5XJC 5XJCp01 EM Lig80 Contacts
Exp_5YZG 5YZGp01 EM Lig80 Contacts
Exp_5Z56 5Z56p01 EM Lig80 Contacts
Exp_5Z57 5Z57p01 EM Lig80 Contacts
Exp_5Z58 5Z58p01 EM Lig80 Contacts
Exp_6AH0 6AH0p01 EM Lig80 Contacts
Exp_6AHD 6AHDp01 EM Lig80 Contacts
Exp_6FF7 6FF7X01 EM No contacts
Exp_6ICZ 6ICZp01 EM Lig80 Contacts
Exp_6ID0 6ID0p01 EM Lig80 Contacts
Exp_6ID1 6ID1p01 EM Lig80 Contacts
Exp_6QDV 6QDVY01 EM Lig18 Contacts
Exp_6QX9 6QX92B01 EM Lig53 Contacts
Exp_6Y53 6Y53b01 EM Lig80 Contacts
Exp_6Y5Q 6Y5Qb01 EM Lig80 Contacts
Exp_7A5P 7A5PX01 EM Lig27 Contacts
Exp_7ABG 7ABGB01 EM Lig80 Contacts
Exp_7ABI 7ABIB01 EM Lig80 Contacts

Ligands tested for Binding - 5 

Ligand ID Ligand Type Ligand Sequence
Lig129 RNA CCUGGUAUUGCAGUACCUCCAGGU
Lig18 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAAGAUUUUUGGAACUCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC
Lig27 RNA AACGGCGGAGGCCACGCCCUCUGUGAAAGGGCGGGGCAUGCAAAUUCGAAAUGAAAGCCCGGGAACGCCGGAAGAAGCACGGGUGUAAGAUUUCCCUUUUCAAAGGCGGAGAAUAAGAAAUCAGCCCGAGAGUGUAAGGGCGUCAAUAGCGCUGUGGACGAGACAGAGGGAAUGGGGCAAGGAGCGAGGCUGGGGCUCUCACCGCGACUUGAAUGUGGAUGAGAGUGGGACGGUGACGGCGGGCGCGAAGGCGAGCGCAUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCCCCUCCGGGGUACAACGUGUUUCCUAAAAGUAGAGGGAGGUGAGAGACGGUAGCACCUGCGGGGCGGCUUGCACGCCGAGUGCCUGUGACGCGCCGGCUUGACUUAACUGCUUCCCUGAAGUACCGUGAGGUUCCUGAUGUGCGGGCGGUAGACGGUAGGCUUAUGCGGCACGCUUUCGUUUCCACCGUGGCUACUGCGCUUUGGGAAGGCCACGACCUCCUCCUUUGGGGAGGUCCUUAGGAUCUCAGCUUGGCAGUCGAGUGGGUGGCGACCUUUUAAAGGAAUGGGACCCACCCGGAGUUCUUCUUUCUCCUGUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUUCUCUCUCUCUCUCUGUCUCUCCGUCUCUCUGUGUCUGUCUCUGUCUCUCUGUCUCUCUCUCUCUCUCUCUCUCUCUCUCCUCUCUCUGUCUCUCUCUCUCUUUCCCCCCCCCUCCCCGCCUCUCCCUCGCUCUCUCUUUUGGUUUCCCCCACCCCCUCCCAAGUUCUGGGG
Lig53 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUAGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC
Lig80 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC