Exp_6QX9

Experiment information

  • Experiment ID: Exp_6QX9
  • PubMed ID : 30975767
  • Experiment Type : EM
  • PDB ID : 6QX9

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P08579 225
P08621 437
P09012 282
Q15427 424
Q9BTD8 480

RRM domains involved in this Experiment

RRM Entryname Sequence Range RRM Structurename
P08579_RRM1 9 - 80 6QX92B01
P08621_RRM1 105 - 175 6QX91K01
P09012_RRM1 12 - 83 6QX91A01
Q15427_RRM1 15 - 85 6QX9B401
Q9BTD8_RRM1 383 - 453 6QX9R01, 6QX9R01

Binding Information from Structures

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_6QX9 6QX91A01 EM Lig42 Contacts
Exp_6QX9 6QX91K01 EM Lig42 Contacts
Exp_6QX9 6QX92B01 EM Lig53 Contacts
Exp_6QX9 6QX9B401 EM No contacts
Exp_6QX9 6QX9R01 EM Lig168 Contacts
Exp_6QX9 6QX9R01 EM Lig89 Contacts

Ligands tested for Binding - 3 

Ligand ID Ligand Type Ligand Sequence
Lig42 RNA AUACUUACCUGGCAGGGGAGAUACCAUGAUCACGAAGGUGGUUUUCCCAGGGCGAGGCUUAUCCAUUGCACUCCGGAUGUGCUGACCCCUGCGAUUUCCCCAAAUGUGGGAAACUCGACUGCAUAAUUUGUGGUAGUGGGGGACUGCGUUCGCGCUUUCCCCUG
Lig53 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUAGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC
Lig168 RNA XAGCUUUGCGCAGUGGCAGUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUUAUUGCUAAUUGAAAACUUUUCCCAAUACCCCGCCGUGACGACUUGCAAUAUAGUCGGCAUUGGCAAUUUUUGACAGUCUCUACGGAGACUGG

Ligand Structures from this Experiment - 4 

Ligand Structurename PDB ID Chain ID Ligand ID
6QX9100 6QX9 1 Lig42
6QX9200 6QX9 2 Lig53
6QX9400 6QX9 4 Lig168
6QX9600 6QX9 6 Lig89