Exp_5YZG

Experiment information

  • Experiment ID: Exp_5YZG
  • PubMed ID : 29301961
  • Experiment Type : EM
  • PDB ID : 5YZG

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P08579 225
Q9NW64 420
Q9UNP9 301
Q9Y5S9 174

RRM domains involved in this Experiment

RRM Entryname Sequence Range RRM Structurename
P08579_RRM1 9 - 80 5YZGp01
Q9NW64_RRM1 234 - 299 5YZGO01
Q9UNP9_RRM1 8 - 78 5YZG101
Q9Y5S9_RRM1 75 - 145 5YZGw01

Binding Information from Structures

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_5YZG 5YZG101 EM No contacts
Exp_5YZG 5YZGO01 EM Lig182 Contacts
Exp_5YZG 5YZGp01 EM Lig80 Contacts
Exp_5YZG 5YZGw01 EM No contacts

Ligands tested for Binding - 3 

Ligand ID Ligand Type Ligand Sequence
Lig149 RNA GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU
Lig182 RNA GGGAAUACACGGAAUUCGAGCUCGCCCACUCUUGGAUCGGAAACCCGUCGGCCUCCGAACGNGUAAGAGCCUAGCAUGUAGAACUGGUUACCUGCAGCCCAAGCUUGCGUACACCAUCAGGGUACGUACUAGUACGUACACCAUCAGGGUACGGCUGCACGUCUAGGGCGCAGUAGUCCAGGGUUUCCUUGAUGAUGUCAUACUUAUCCUGUCCCUUUUUUUUCCACGGCUCGCGGUUGAGGACAAACUCUUCGCGGUCUUUCCAGUGGGGAUCC
Lig80 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC

Ligand Structures from this Experiment - 3 

Ligand Structurename PDB ID Chain ID Ligand ID
5YZGF00 5YZG F Lig149
5YZGG00 5YZG G Lig182
5YZGH00 5YZG H Lig80