Exp_5Z56

Experiment information

  • Experiment ID: Exp_5Z56
  • PubMed ID : 29360106
  • Experiment Type : EM
  • PDB ID : 5Z56

Protein involved in this Experiment

UniProt ID Protein Length Mutated Instance
P08579 225
Q15427 424
Q9NW64 420
Q9UNP9 301
Q9Y388 322
Q9Y3B4 125

RRM domains involved in this Experiment

RRM Entryname Sequence Range RRM Structurename
P08579_RRM1 9 - 80 5Z56p01
P08579_RRM2 153 - 219 5Z56p02
Q15427_RRM1 15 - 85 5Z56401
Q9NW64_RRM1 234 - 299 5Z56O01
Q9UNP9_RRM1 8 - 78 5Z56y01
Q9Y388_RRM1 38 - 108 5Z56Y01
Q9Y3B4_RRM1 21 - 88 5Z56501

Binding Information from Structures

Experiment ID RRM Structure Experiment Type Ligand ID Contacts
Exp_5Z56 5Z56401 EM No contacts
Exp_5Z56 5Z56501 EM No contacts
Exp_5Z56 5Z56O01 EM Lig91 Contacts
Exp_5Z56 5Z56Y01 EM Lig91 Contacts
Exp_5Z56 5Z56p01 EM Lig80 Contacts
Exp_5Z56 5Z56p02 EM No contacts
Exp_5Z56 5Z56y01 EM No contacts

Ligands tested for Binding - 3 

Ligand ID Ligand Type Ligand Sequence
Lig80 RNA AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAUCUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGAAUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACCC
Lig91 RNA GGGAAUACACGGAAUUCGAGCUCGCCCACUCUUGGAUCGGAAACCCGUCGGCCUCCGAACGGUAAGAGCCUAGCAUGUAGAACUGGUUACCUGCAGCCCAAGCUUGCGUACACCAUCAGGGUACGUACUAGUACGUACACCAUCAGGGUACGGCUGCACGUCUAGGGCGCAGUAGUCCAGGGUUUCCUUGAUGAUGUCAUACUUAUCCUGUCCCUUUUUUUUCCACGGCUCGCGGUUGAGGACAAACUCUUCGCGGUCUUUCCAGUGGGGAUCC
Lig149 RNA GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU

Ligand Structures from this Experiment - 3 

Ligand Structurename PDB ID Chain ID Ligand ID
5Z56F00 5Z56 F Lig149
5Z56G00 5Z56 G Lig91
5Z56H00 5Z56 H Lig80